Welcome to T3/Barley
The Triticeae Toolbox (T3) is the web portal for data generated by the Triticeae Coordinated Agricultural Project (T-CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). It also contains data from US Uniform Regional Nurseries, supported by the US Wheat and Barley Scab Initiative. The database was initially developed as The Hordeum Toolbox (THT) at the website hordeumtoolbox.org to hold barley data generated by the Barley CAP project (2006-2010). T3 Barley is an extension of The Hordeum Toolbox and incorporates all the THT data. The database was further developed at the website triticeaetoolbox.org/barley. That website was archived in June 2020 and all the data moved to this current site.
Data Usage Policy
The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.
Citation
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite: Nicolas Morales, Jean-Luc Jannink, Clay L. Birkett, David J Waring, Lukas A Mueller, et. al., Breedbase: a digital ecosystem for modern plant breeding, G3 Genes|Genomes|Genetics, Volume 12, Issue 7, July 2022, jkac078, https://doi.org/10.1093/g3journal/jkac078
If you have data to publish in our database, please submit the data using barley-sandbox.
We're collecing names and emails of those that are interested in attending future T3/Breedbase workshops on various topics such as using Android Field Book, Seedlots, Barcodes, or any other topic you may be interested in learning more about. Fill out the Virual Workshop Interest Form if you may be interested in attending a future workshop. Once we have enough interest in a particular topic, we'll reach out to everyone to schedule a date.
Scab Forum Presentation
Dec 5, 2022
The presentation of T3/Breedbase given at the 2022 Wheat & Barley Scab Forum can be found here. It includes information about the main features of T3/Breedbase, a general overview of creating phenotype upload templates, and highlights some of T3/Breedbase's advanced features (such as Seedlots and Barcodes).
Site update
November 1, 2020 SGN-285.0
Analysis
Manage (contact us to use these features)
Breedbase Workshop Notes & Videos
September 10, 2020
T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.
Video recordings of the workshop are available on the Breedbase YouTube Channel.
T3 Phenotype Data Loaded
July 29, 2020
1149 Phenotype trials and mean data loaded from T3.
Go to the Search > Trials
Maps and JBrowse added
July 22, 2020
Physical maps for Morex 2016 and Barley 50K added
Go to the Maps
Accessions Added
June 26, 2020
All Accessions (about 60,000 in total) from the T3/Classic barley database have been transferred over to T3/Breedbase barley database.
Go to the Search > Accessions and Plots
Blank Upload Templates
Below are blank upload templates for each data type.
Example Templates
Below are example templates generated for demo wheat trials from a 2020 workshop. You can use these files to see how the templates are properly formatted.
Submission
Use the Phenotype Submission Form to submit your data to the curators for inclusion in T3/Barley.
For more detailed instructions, see the Detailed Phenotype Upload Instructions
Explore T3/Barley
To view most of the data on T3/Barley, you'll first need to create a free account.
Login
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Use the Search Wizard to explore the database or search individual data types:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Submit Phenotype Data
Phenotype data can be submitted to T3/Barley in two ways:
Submitting files directly to us
If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.
Phenotype Submission FormUsing the Sandbox
When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Barley Sandbox for more information.
Visit the T3/Barley SandboxSubmit Genotype Data
Please Contact Us if you have genotype data you would like to submit to T3/Barley.
User Guides
New to T3/Barley?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Barley is open source software and available under the MIT License and may be downloaded from GitHub.
Working
