Welcome to the New T3/Barley


The Triticeae Toolbox (T3) is the web portal for data generated by the Triticeae Coordinated Agricultural Project (T-CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). It also contains data from US Uniform Regional Nurseries, supported by the US Wheat and Barley Scab Initiative. The database was initially developed as The Hordeum Toolbox (THT) to hold barley data generated by the Barley CAP project (2006-2010).

T3 Barley is an extension of The Hordeum Toolbox (THT), which was created by the preceding Barley CAP. T3 Barley incorporates all of the THT data.


  Leave Feedback

The New T3/Barley is the next evolution of The Triticeae Toolbox (T3). We are in the process of transitioning all of T3's data and tools to this new system. We encourage you to leave feedback about feature improvements, missing tools, and/or any ideas you may have to improve the site.




News

Breedbase Workshop Notes & Videos

September 10, 2020

T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.

Video recordings of the workshop are available on the Breedbase YouTube Channel.

T3 Phenotype Data Loaded

July 29, 2020

1149 Phenotype trials and mean data loaded from T3.

Go to the Search > Trials

Maps and JBrowse added

July 22, 2020

Physical maps for Morex 2016 and Barley 50K added

Go to the Maps

Accessions Added

June 26, 2020

All Accessions (about 60,000 in total) from the T3/Classic barley database have been transferred over to T3/Breedbase barley database.

Go to the Search > Accessions and Plots



Explore T3/Barley

 New User

To view most of the data on T3/Barley, you'll first need to create a free account.


 Login

If you already have an account, login to get full access.

Use the Search Wizard to explore the database or search individual data types:



Explore Experiments in the Search Wizard:

You must first log in to view the lists of experiments...




Submit Phenotype Data

Phenotype data can be submitted to T3/Barley in two ways:

Using the Sandbox

When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Barley Sandbox for more information.

   Visit the T3/Barley Sandbox

Submitting files directly to us

If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.

   Phenotype Submission Form


Submit Genotype Data

Please Contact Us if you have genotype data you would like to submit to T3/Barley.




User Guides

New to T3/Barley?

View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.





Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2015. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.

T3/Barley is open source software and available under the MIT License and may be downloaded from GitHub.