Welcome to T3/Barley
T3/Barley archive site last updated June 2020
The Triticeae Toolbox (T3) is the web portal for data generated by the Triticeae Coordinated Agricultural Project (T-CAP), funded by the National Institute for Food and Agriculture (NIFA) of the United States Department of Agriculture (USDA). It also contains data from US Uniform Regional Nurseries, supported by the US Wheat and Barley Scab Initiative. The database was initially developed as The Hordeum Toolbox (THT) to hold barley data generated by the Barley CAP project (2006-2010).
T3 Barley is an extension of The Hordeum Toolbox (THT), which was created by the preceding Barley CAP. T3 Barley incorporates all of the THT data.
Data Usage Policy
The data on this database is shared according to the Toronto agreement. Click here to view the full data usage policy.
If data on The Triticeae Toolbox was relevant to analyses or findings that you publish, please cite:
Blake, V., Birkett, C.L., Matthews, D.E., Hane, D., Bradbury, P., Jannink, J. 2016. The Triticeae Toolbox: Combining Phenotype and Genotype Data to Advance Small-Grains Breeding. The Plant Genome. doi: 10.3835/PlantGenome2014.12.0099.
November 1, 2020 SGN-285.0
Breedbase Workshop Notes & Videos
September 10, 2020
T3 hosted a practical remote workshop demonstrating the process of uploading field trial data to the database. Notes from that workshop, which include step-by-step instructions on how to upload a sample dataset, are now available.
Video recordings of the workshop are available on the Breedbase YouTube Channel.
T3 Phenotype Data Loaded
July 29, 2020
1149 Phenotype trials and mean data loaded from T3.
Go to the Search > Trials
Maps and JBrowse added
July 22, 2020
Physical maps for Morex 2016 and Barley 50K added
Go to the Maps
June 26, 2020
All Accessions (about 60,000 in total) from the T3/Classic barley database have been transferred over to T3/Breedbase barley database.
Go to the Search > Accessions and Plots
To view most of the data on T3/Barley, you'll first need to create a free account.
If you already have an account, login to get full access.
Use the Quick Search to find an Accession, Trial, Trait, etc by name:
Use the Search Wizard to explore the database or search individual data types:
Explore Experiments in the Search Wizard:
You must first log in to view the lists of experiments...
Submit Phenotype Data
Phenotype data can be submitted to T3/Barley in two ways:
Using the Sandbox
When using the sandbox, you create upload templates that contain the trial information. Then, you upload those templates to the Sandbox to check for any errors. When the trial has been successfully added you can use the Submit Trial function to submit the trial directly to us for inclusion in the production site. Visit the T3/Barley Sandbox for more information.Visit the T3/Barley Sandbox
Submitting files directly to us
If you have upload templates that you think are properly formatted or data files that are not formatted as upload templates, you can submit the files directly to use for inclusion in the production site by submitting them to us through the Phenotype Submission Form.Phenotype Submission Form
Submit Genotype Data
Please Contact Us if you have genotype data you would like to submit to T3/Barley.
New to T3/Barley?
View the comprehensive Documentation from the Breedbase team to learn about available features or watch the detailed Video Tutorials.
T3/Barley Data Usage Policy
In 2009 the Toronto International Data Release Workshop agreed on a policy statement about prepublication data sharing. Accordingly, the data producers are making many of the datasets in T3/Barley available prior to publication of a global analysis. Guidelines for appropriate sharing of these data are given in the excerpt from the Toronto Statement.
More information is available on the data usage policy page.
I agree to the Data Usage Policy as specified in Toronto Statement.