Maps

Morex 2016, IBSC: Morex 2016, IBSC
Barley 50K: Barley 50K

Each genotype protocol and genotype project is loaded with map information that is current when that project was created. This webite also has Cview as a web-based comparative viewer. To view documentation on the Cview program see The SGN comparative map viewer.

Barley Maps on archived site

To view genetic maps, see our archived site Map Sets. To download genetic maps, see our archived site Download Map Sets.

UCR04162008	Consensus Map from the Close Lab, UC Riverside. The map contains only SNPs (2943 of them) and is a consensus genetic linkage map derived from four DH populations. Approximately 22,000 SNPs were identified from barley ESTs and sequenced amplicons; 4,596 of them were tested for performance in three pilot phase Illumina GoldenGate assays. Data from three barley doubled haploid mapping populations supported the production of an initial consensus map. Over 200 germplasm selections, principally European and US breeding material, were used to estimate minor allele frequency (MAF) for each SNP. We selected 3,072 of these tested SNPs based on technical performance, map location, MAF and biological interest to fill two 1536-SNP production assays (BOPA1 and BOPA2), which were made available to the barley genetics community. Data were added using BOPA1 from a fourth mapping population to yield a consensus map containing 2,943 SNP loci in 975 marker bins covering a genetic distance of 1099 cM. From: Szucs et al, Development and Implementation of High-Throughput SNP Genotyping in Barley. BMC Genomics 10:582 (2009).
Steptoe x Morex	Map is from Table S1, Additional File 3 of Based on supplemental data file in Close, T. J., Bhat, P. R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., et al. (2009). Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics, 10, 582.
OWB_2383	OWB_2383 Hayes Lab; the 722 bPb type DArT marker mapped in the OWB, 458 markers were used to develop the barley DArT consensus map (Wenzl et al. 2006); Historical SNPs from (GrainGenes (http://wheat.pw.usda.gov/ggpages/maps/OWB/) Map Data Report: Barley, OWB, 2005). From Szucs, V. Blake, P.R. Bhat, S. Chao, T.J. Close, A. Cuesta-Marcos, G.J. Muehlbauer, L. Ramsay, R. Waugh, and P. M. Hayes. 2009. An integrated resource for barley linkage map and malting quality QTL alignment. The Plant Genome. In press.
Oregon Wolfe Barley, GBS 2012	35,000K marker GBS map for the Oregon Wolfe Barley population. From http://www.wheatgenetics.org/index.php/download/viewcategory/9-oregonwolfebarley
Morex x Barke, GBS 2012	Data contributed by Jesse Poland, July 2012.
Morex x Barke	Based on supplemental data file in Close, T. J., Bhat, P. R., Lonardi, S., Wu, Y., Rostoks, N., Ramsay, L., et al. (2009). Development and implementation of high-throughput SNP genotyping in barley. BMC Genomics, 10, 582.
iSelect_2013Consensus_ChipSNPs	Consensus map from Morex x Barke iSelect SNP (Comadran et al. 2012) and mapped POPA SNPs from Munoz-Amatriain et al, The Plant Genome (2011) 4:328 . This is a subset of the iSelect_2013Consensus_AllSNPs map set containing only markers found on the iSelect chip.This map is being made available before publication and users should cite the map as Munoz-Amatriain et al. (in preparation)
iSelect_2013Consensus_AllSNPs	Consensus map from Morex x Barke iSelect SNP (Comadran et al. 2012) and mapped POPA SNPs from Munoz-Amatriain et al, The Plant Genome (2011) 4:328 . This map is being made available before publication and users should cite the map as Munoz-Amatriain et al. (in preparation)
Barley, 2012 SNP, JHutton	SNP map with BOPA and SCRI markers. Morex x Barke map published by Comadran et al. (2012) Data from http://bioinf.hutton.ac.uk/iselect/app/
Barley, 2012 OPA, Consensus	Consensus maps from Munoz-Amatriain, et al., (2011) The Plant Journal 4:238. Note, in T3, POPA names are given for markers not included in the BOPA1 or BOPA2 arrays.